≫ Archive Data

Biological Dynamics Markup Language

What is BDML?

BDML (Biological Dynamics Markup Language) is an open format for representing quantitative data of biological dynamics. It is based on eXtensible Markup Language (XML). BDML covers a wide variety of quantitative data of biological dynamics from molecules to cells to organisms. The following paper is describing BDML and BDML-compatible software tools.


BDML Publication

Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami (2015)
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data. Bioinformatics 31(7): 1044-1052 (online link).

OMicsBDML

OmicsBDML is an open format for representing quantitative omics data, such as gene, protein, and metabolite. OmicsBDML schema can be found here OmicsBDML schema.

BDML schema

BDML specification